(* Content-type: application/vnd.wolfram.mathematica *) (*** Wolfram Notebook File ***) (* http://www.wolfram.com/nb *) (* CreatedBy='Mathematica 9.0' *) (*CacheID: 234*) (* Internal cache information: NotebookFileLineBreakTest NotebookFileLineBreakTest NotebookDataPosition[ 157, 7] NotebookDataLength[ 28301, 1615] NotebookOptionsPosition[ 27035, 1574] NotebookOutlinePosition[ 27574, 1594] CellTagsIndexPosition[ 27531, 1591] WindowFrame->Normal*) (* Beginning of Notebook Content *) Notebook[{ Cell[CellGroupData[{ Cell["\<\ (* H2C=CH2 with spherical bananas: Two fused methanes with CH4 data \ CH4Mt(min).nb 17.06.2012 *) Clear[z,sig1,sig2,sig4,k1,k2,k4,nc,R1,R2,R3,R4,w,p,vee,vne,vnn, xc,yc,zc,xn,yn,zn,oc,ch,rr,cs,ss,d1,d2,d3,d4,d5,pi,i,j,d,t]; z=6.0; pi=0.0; (* distance of bananas from C-C axis, pi =0 is regular tetraedric *) nc=8; (* number of clouds *) sig1=0.3; sig2=0.3; sig4=sig2; (* screening const. from e-e interaction in \ doubly occ. clouds *) k1=1.027; k2=1.23; k4=k2; (* parameters for kinetic energy of clouds; k=1.0 \ Kimball's lowest value *) bohr=0.529177; rad=57.29578; (* C He-shells *) Ekin = 2*(2.25*k1/R1^2); vee=2*(3.0*sig1/R1); vne=-2*(3.0*z/R1); (* this is the common edge assumption *) R4=R2; (* bonding pairs *) Ekin = Ekin + 2.25*(4*k2/R2^2+2*k4/R4^2); vee=vee+3.0*(4*sig2/R2+2*sig4/R4); (* cloud occupation *) oc={-2,-2,-2,-2,-2,-2,-2,-2}; (* nuclear charges for C1,C2,H3,H4,H5,H6, banana7, banana8 *) ch={6,6,1,1,1,1,0,0}; (* cloud radii in the same order *) rr={R1,R1,R2,R2,R2,R2,R4,R4}; (* w is half angle between two C-H of CH4, i.e. 109.47\[Degree]/2 *) w=ArcCos[-1/3]/2; cs=Cos[w]; ss=Sin[w]; (* edge length of tetrahedron of 4 equal clouds *) a=4*(R1+R2)/Sqrt[6]; (* 4/Sqrt[6] is also Sqrt[8/3] *) (* x is C-C bond axis, xy plane of molecule *) (* nuclear coordinates in terms of radii; C nucleus assumed in center of \ C(1s) cloud *) d1=(R1+R2)*cs; (* R1+R2 is radius of outer sphere for tetrahedron of equal \ clouds *) d2=d1+(R1+R2+p)*cs; d3=(R1+R2+p)*ss; xn={-d1,d1,-d2,-d2,d2,d2,0,0}; yn={0,0,d3,-d3,-d3,d3,0,0}; zn={0,0,0,0,0,0,0,0}; (* cloud coordinates in terms of radii *) d4=d1+(R1+R2)*cs; d5=(R1+R2)*ss; xc={-d1,d1,-d4,-d4,d4,d4,0,0}; yc={0,0,d5,-d5,-d5,d5,0,0}; zc={0,0,0,0,0,0,pi+a/2,-pi-a/2}; (* potential energy of protons in CH-clouds with eccentricity p *) vne=vne-4*(3-(p/R2)^2)/R2; (* cc: sum of cloud-cloud potential energies *) For[i = 1, i < nc, i++, For[j = i+1, j < nc+1, j++, vee = vee + \ oc[[i]]*oc[[j]]/Sqrt[(xc[[i]]-xc[[j]])^2+(yc[[i]]-yc[[j]])^2+(zc[[i]]-zc[[j]])\ ^2]]] (* nn: sum of nuclei-nuclei potential energies *) vnn = 0.0; For[i = 1, i < nc-2, i++, For[j = i+1, j < nc-1, j++, vnn = vnn + ch[[i]]*ch[[j]]/Sqrt[(xn[[i]]-xn[[j]])^2+(yn[[i]]-yn[[j]])^2]]] (* cn: sum of cloud-nuclei potential energies *) For[i = 1, i < nc+1, i++, For[j = 1, j < nc+1, j++, If[i != j, vne = vne + \ oc[[i]]*ch[[j]]/Sqrt[(xc[[i]]-xn[[j]])^2+(yc[[i]]-yn[[j]])^2+(zc[[i]]-zn[[j]])\ ^2]]]] Epot=vne+vee+vnn; func=Ekin+Epot; (* 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